| Armour Creek | Armour Creek | 1.96 | 5.75 | CLASS II | Buffalo | Map Link |
| Bear Creek | Bear Creek | 7.50 | 10.00 | CLASS III | Buffalo,Pepin | Map Link |
| Center Creek | Center Creek | 0.00 | 4.35 | CLASS II | Buffalo | Map Link |
| Cooke Valley Creek | Cooke Valley Creek | 0.00 | 2.80 | CLASS III | Buffalo | Map Link |
| Danuser Creek | Danuser Creek | 0.00 | 7.07 | CLASS II | Buffalo | Map Link |
| Deer Creek | Deer Creek | 0.00 | 4.00 | CLASS II | Buffalo | Map Link |
| Doelle Creek | Doelle Creek | 0.00 | 5.07 | CLASS III | Buffalo | Map Link |
| Eagle Creek | Eagle Creek | 3.49 | 9.09 | CLASS II | Buffalo | Map Link |
| Eagle Creek | Eagle Creek | 9.09 | 17.56 | CLASS II | Buffalo | Map Link |
| Elk Creek | Elk Creek | 0.00 | 3.32 | CLASS II | Buffalo | Map Link |
| Elk Creek | Elk Creek | 3.31 | 16.50 | CLASS II | Buffalo,Trempealeau | Map Link |
| Harvey Creek | Harvey Creek | 3.28 | 5.64 | CLASS III | Buffalo | Map Link |
| Harvey Creek | Harvey Creek | 5.64 | 7.09 | CLASS III | Buffalo | Map Link |
| Kilness Creek | Kilness Creek | 0.00 | 4.05 | CLASS III | Buffalo | Map Link |
| Little Bear Creek | Little Bear Creek | 4.35 | 13.17 | CLASS II | Buffalo | Map Link |
| Little Waumandee Creek | Little Waumandee Creek | 0.00 | 11.00 | CLASS II | Buffalo | Map Link |
| Little Waumandee Creek | Little Waumandee Creek | 11.00 | 21.11 | CLASS II | Buffalo | Map Link |
| North Branch Little Bear Creek | North Branch Little Bear Creek | 0.00 | 5.40 | CLASS II | Buffalo | Map Link |
| North Branch Little Bear Creek | North Branch Little Bear Creek | 5.40 | 6.79 | CLASS II | Buffalo | Map Link |
| Peeso Creek | Hoyts Creek | 0.00 | 0.72 | CLASS III | Buffalo | Map Link |
| Peeso Creek | Hoyts Creek | 1.22 | 9.66 | CLASS III | Buffalo,Eau Claire | Map Link |
| Rossman Creek | Rossman Creek | 0.00 | 3.66 | CLASS II | Buffalo | Map Link |
| South Fork Elk Creek | Elk Creek, South Fork | 0.00 | 5.06 | CLASS III | Buffalo | Map Link |
| Sport Valley Creek | Sport Valley Creek | 0.00 | 3.44 | CLASS III | Buffalo,Trempealeau | Map Link |
| Spring Creek | Spring Creek | 2.61 | 5.49 | CLASS II | Buffalo | Map Link |
| Tamarack Creek | Tamarack Creek | 0.00 | 3.05 | CLASS II | Buffalo | Map Link |
| Tamarack Creek | Tamarack Creek | 3.06 | 4.93 | CLASS II | Buffalo | Map Link |
| Tamarack Creek | Tamarack Creek | 4.94 | 8.77 | CLASS II | Buffalo | Map Link |
| Traverse Valley Creek | Traverse Valley Creek | 6.10 | 8.96 | CLASS II | Buffalo,Trempealeau | Map Link |
| Trout Creek | Trout Creek | 0.00 | 8.48 | CLASS II | Buffalo | Map Link |
| Unnamed | Botana Valley Creek | 0.00 | 6.16 | CLASS II | Buffalo | Map Link |
| Unnamed | Newton Valley Creek (Shoe Creek) | 0.00 | 4.27 | CLASS II | Buffalo,Pepin | Map Link |
| Unnamed | Owen Valley Ck. (31-10) Trib. To North Branch Of Little Be | 0.00 | 2.16 | CLASS III | Buffalo | Map Link |
| Unnamed | Swinns Valley Creek | 0.00 | 8.49 | CLASS II | Buffalo | Map Link |
| Unnamed | Unnamed Cr T24n R12w S5 (5-9) | 0.00 | 3.27 | CLASS II | Buffalo | Map Link |
| Unnamed | Weisenbeck Valley Creek T23n R13w S2 (2-3) | 0.00 | 5.15 | CLASS II | Buffalo | Map Link |
| Unnamed | Yeager Valley Creek | 0.00 | 4.43 | CLASS II | Buffalo | Map Link |
| Waumandee Creek | Waumandee Creek | 26.72 | 33.64 | CLASS II | Buffalo | Map Link |