| Allen Creek | Allen Creek | 0.00 | 3.72 | CLASS I | Waupaca,Portage | Map Link |
| Austin Creek | Austin Creek | 0.00 | 4.78 | CLASS II | Waupaca,Waushara | Map Link |
| Austin Creek | Austin Creek | 4.78 | 6.14 | CLASS I | Waupaca | Map Link |
| Basteen Creek | Basteen Creek | 0.00 | 2.05 | CLASS I | Waupaca | Map Link |
| Bestul Creek | Bestful Creek | 0.00 | 3.10 | CLASS II | Waupaca | Map Link |
| Blake Creek | Blake Creek | 10.06 | 12.86 | CLASS II | Waupaca | Map Link |
| Bradley Creek | Bradley Creek | 0.00 | 6.16 | CLASS I | Waupaca,Portage | Map Link |
| Comet Creek | Comet Creek | 0.00 | 8.03 | CLASS I | Waupaca | Map Link |
| Crystal River | Crystal River | 2.43 | 12.20 | CLASS II | Waupaca | Map Link |
| Emmons Creek | Emmons Creek | 0.00 | 7.74 | CLASS I | Waupaca,Portage | Map Link |
| Engibretson Creek | Engibretson (Stenson) Creek | 3.49 | 7.28 | CLASS I | Waupaca | Map Link |
| Flume Creek | Flume Creek | 0.00 | 4.61 | CLASS II | Waupaca | Map Link |
| Flume Creek | Flume Creek | 4.61 | 7.54 | CLASS I | Waupaca,Portage | Map Link |
| Geskey Creek | Geskey Creek | 0.00 | 4.03 | CLASS II | Waupaca | Map Link |
| Griffin Creek | Griffin Creek | 0.00 | 2.83 | CLASS I | Waupaca,Portage | Map Link |
| Hartman Creek | Hartman Creek | 0.00 | 1.61 | CLASS II | Waupaca | Map Link |
| Hydes Creek | Hydes Creek | 0.00 | 1.49 | CLASS I | Waupaca | Map Link |
| Jackson Creek | Jackson Creek | 0.00 | 3.52 | CLASS I | Shawano,Waupaca | Map Link |
| Jones Creek | Jones Creek | 0.00 | 1.28 | CLASS I | Waupaca | Map Link |
| Leer Creek | Leers Creek | 0.00 | 3.01 | CLASS I | Waupaca | Map Link |
| Little Wolf River | Little Wolf River | 37.85 | 49.81 | CLASS II | Waupaca | Map Link |
| Little Wolf River | Little Wolf River | 49.81 | 50.99 | CLASS I | Waupaca,Portage | Map Link |
| Little Wolf River | Little Wolf River | 50.99 | 51.61 | CLASS I | Waupaca,Portage | Map Link |
| Little Wolf River | Little Wolf River | 51.61 | 51.92 | CLASS I | Waupaca | Map Link |
| McLean Creek | Mclean Creek | 0.00 | 3.78 | CLASS I | Waupaca | Map Link |
| Mehlberg Creek | Mehlberg Creek | 0.00 | 3.05 | CLASS I | Shawano,Waupaca | Map Link |
| Murry Creek | Murry Creek (N Fork Radley Cr) | 0.00 | 5.09 | CLASS I | Waupaca,Portage | Map Link |
| Nace Creek | Trout (Nace) Creek | 0.00 | 8.12 | CLASS I | Waupaca,Portage | Map Link |
| Naylor Creek | Naylor Creek | 0.00 | 1.62 | CLASS I | Waupaca | Map Link |
| North Branch Pigeon River | Doty Creek | 6.88 | 11.41 | CLASS I | Waupaca | Map Link |
| North Branch Pigeon River | North Branch Pigeon River | 0.00 | 5.34 | CLASS II | Waupaca | Map Link |
| North Branch of South Branch Little Wolf River | Little Wolf-N. Branch Of S. Branch | 7.45 | 16.66 | CLASS II | Waupaca | Map Link |
| North Fork Blake Creek | Blake Creek-N. Fork | 0.00 | 4.98 | CLASS II | Waupaca | Map Link |
| Olson Creek | Olson Creek | 0.00 | 0.35 | CLASS I | Waupaca | Map Link |
| Peterson Creek | Peterson Creek | 0.00 | 8.18 | CLASS I | Waupaca | Map Link |
| Peterson Creek | Peterson Creek | 8.18 | 9.32 | CLASS I | Waupaca,Portage | Map Link |
| Radley Creek | Radley Creek | 0.00 | 11.51 | CLASS I | Waupaca,Portage | Map Link |
| Sannes Creek | Sannes Creek | 0.00 | 3.76 | CLASS I | Waupaca,Portage | Map Link |
| South Branch Little Wolf River | Leers Creek | 37.84 | 39.86 | CLASS I | Waupaca | Map Link |
| South Branch Little Wolf River | Mack Creek | 33.90 | 37.84 | CLASS I | Waupaca | Map Link |
| South Branch Little Wolf River | S. Branch Little Wolf | 18.09 | 32.24 | CLASS II | Waupaca | Map Link |
| South Branch Pigeon River | South Branch Pigeon River | 12.31 | 14.08 | CLASS II | Waupaca | Map Link |
| South Branch Pigeon River | South Branch Pigeon River | 14.59 | 19.49 | CLASS I | Waupaca | Map Link |
| South Fork Blake Creek | Blake Creek - S. Fork | 1.00 | 6.34 | CLASS I | Waupaca | Map Link |
| South Fork Blake Creek | Blake Creek-S. Fork | 0.00 | 1.00 | CLASS II | Waupaca | Map Link |
| South Fork South Branch Pigeon River | Pigeon River-S. Fork, S. Branch | 0.00 | 3.00 | CLASS I | Waupaca | Map Link |
| South Fork Whitcomb Creek | Whitcomb Creek-S. Fork | 0.00 | 4.24 | CLASS I | Waupaca | Map Link |
| Spaulding Creek | Spaulding Creek | 0.00 | 9.12 | CLASS I | Waupaca | Map Link |
| Unnamed | Creek 2-1 (T25n R12e) | 2.98 | 7.02 | CLASS I | Shawano,Waupaca | Map Link |
| Unnamed | Local Water | 0.00 | 2.00 | CLASS I | Waupaca | Map Link |
| Unnamed | Local Water | 0.00 | 1.31 | CLASS I | Waupaca | Map Link |
| Unnamed | Local Water | 0.00 | 1.29 | CLASS I | Waupaca | Map Link |
| Unnamed | Un Cr (T23n R11e S32) | 0.00 | 2.00 | CLASS I | Waupaca | Map Link |
| Unnamed | Un Creek (T25n-R12e-S02) | 0.00 | 2.98 | CLASS I | Waupaca | Map Link |
| Unnamed | Unnamed Stream | 0.00 | 4.93 | CLASS I | Waupaca,Portage | Map Link |
| Unnamed | Unnamed Trib to Whitcomb Cr | 1.31 | 3.02 | CLASS I | Waupaca | Map Link |
| Walla Walla Creek | Walla Walla Creek | 1.59 | 10.23 | CLASS II | Waupaca | Map Link |
| Waupaca River | Waupaca River | 17.25 | 32.77 | CLASS II | Waupaca | Map Link |
| Whitcomb Creek | Whitcomb Creek | 0.00 | 15.82 | CLASS I | Waupaca | Map Link |