| Lake Michigan | Blue Harbor Beach, Lake Michigan | 0.00 | 0.14 | 20 | Great Lakes Beach | Sheboygan | E. coli | NA | Water Delisted | Delisted 2018 |
| Lake Michigan | KK Road Beach, Lake Michigan | 0.00 | 0.56 | 20 | Great Lakes Beach | Sheboygan | E. coli | NA | Water Delisted | Delisted 2014 |
| Lake Michigan | Van Ess Road Beach, Lake Michigan | 0.00 | 0.49 | 20 | Great Lakes Beach | Sheboygan | E. coli | NA | Water Delisted | Delisted 2012 |
| Lake Michigan | Kohler Andrae Beach, Lake Michigan | 0.00 | 3.71 | 20 | Great Lakes Beach | Sheboygan | E. coli | NA | Water Delisted | Delisted 2018 |
| Lake Michigan | Lake Michigan | 0.00 | 261.05 | 20 | Great Lakes Shoreline | Door, Kenosha, Kewaunee, Manitowoc, Milwaukee, Ozaukee, Racine, Sheboygan | Mercury | Mercury Contaminated Fish Tissue | 303d Listed | Low |
| Lake Michigan | Lake Michigan | 0.00 | 261.05 | 20 | Great Lakes Shoreline | Door, Kenosha, Kewaunee, Manitowoc, Milwaukee, Ozaukee, Racine, Sheboygan | PCBs | PCBs Contaminated Fish Tissue | 303d Listed | Low |
| Lake Michigan | Amsterdam Beach, Lake Michigan | 0.00 | 0.33 | 20 | Great Lakes Beach | Sheboygan | E. coli | Recreational Restrictions - Pathogens | 303d Listed | Low |
| Barr Creek | Barr Creek | 0.00 | 3.38 | 50200 | River | Sheboygan | Total Phosphorus | High Phosphorus Levels | TMDL Approved | Not Applicable |
| Black River | Black River | 0.00 | 5.99 | 50300 | River | Sheboygan | Total Phosphorus | Degraded Biological Community | TMDL Approved | Not Applicable |
| Black River | Black River | 5.99 | 11.01 | 50300 | River | Sheboygan | Total Phosphorus | NA | Water Delisted | Delisted 2020 |