| Alice Lake | Alice Lake |  |  | 10.03 | LAKE | 967600 | Oneida | 2017 | Good |  |  | 
| Bass Creek | Bass Creek | 0.00 | 1.00 | 1.00 | RIVER | 1556000 | Lincoln |  | Unknown |  |  | 
| Bass Lake | Bass Lake |  |  | 25.45 | LAKE | 1556200 | Lincoln | 2017 | Excellent |  |  | 
| Bowles Lake | Bowles Lake |  |  | 29.03 | LAKE | 973200 | Oneida | 2013 | Good |  |  | 
| Clark Lake | Clark Lake |  |  | 39.34 | LAKE | 1556100 | Lincoln | 2017 | Excellent |  |  | 
| Clear Lake | Clear Lake |  |  | 258.55 | LAKE | 1555400 | Lincoln | 2024 | Excellent |  |  | 
| Cook Lake | Cook Lake |  |  | 22.47 | LAKE | 977700 | Oneida | 2017 | Fair |  |  | 
| Crescent Creek | Crescent Creek | 0.00 | 3.57 | 3.57 | RIVER | 1564000 | Lincoln, Oneida | 2024 | Good |  |  | 
| Crescent Lake | Crescent Lake |  |  | 616.04 | LAKE | 1564200 | Oneida | 2025 | Excellent |  |  | 
| Emma Lake | Emma Lake |  |  | 226.53 | LAKE | 983500 | Oneida | 2024 | Good |  |  | 
| Finger Lake | Finger Lake |  |  | 8.28 | LAKE | 984600 | Oneida | 2013 | Unknown |  |  | 
| Flag Lake | Flag Lake |  |  | 7.71 | LAKE | 985200 | Oneida | 2008 | Unknown |  |  | 
| Fox Lake | Fox Lake |  |  | 23.65 | LAKE | 1563400 | Oneida | 2017 | Good |  |  | 
| Green Bass Lake | Green Bass Lake |  |  | 65.92 | LAKE | 987800 | Oneida | 2017 | Excellent |  |  | 
| Halfmoon Lake | Halfmoon Lake |  |  | 102.49 | LAKE | 988000 | Lincoln | 2025 | Good |  |  | 
| Hanson Lake | Hanson Lake |  |  | 34.72 | LAKE | 988200 | Oneida | 2021 | Good |  |  | 
| Hat Rapids Flowage | Hat Rapids Flowage |  |  | 650.00 | LAKE | 1567325 | Oneida | 2023 | Unknown |  |  | 
| Heal Creek | Heal Creek | 0.00 | 1.19 | 1.19 | RIVER | 1567400 | Oneida |  | Unknown |  |  | 
| Heal Creek | Heal Creek | 1.19 | 2.38 | 1.19 | RIVER | 1567400 | Oneida |  | Unknown | CLASS II |  | 
| Heal Lake | Heal Lake |  |  | 16.50 | LAKE | 1567500 | Oneida | 2010 | Unknown |  |  | 
| Hoist Lake | Hoist Lake |  |  | 10.20 | LAKE | 990800 | Oneida | 2013 | Good |  |  | 
| Jennie Creek | Jennie Creek | 0.00 | 3.43 | 3.43 | RIVER | 1563600 | Lincoln, Oneida | 2024 | Good | CLASS I | ERW | 
| John Lake | John Lake |  |  | 8.85 | LAKE | 993000 | Oneida | 2016 | Good |  |  | 
| Lake Alice | Lake Alice |  |  | 1438.32 | IMPOUNDMENT | 1555900 | Lincoln | 2025 | Poor |  |  | 
| Lake Mable | Lake Mable |  |  | 25.11 | LAKE | 995300 | Lincoln | 2017 | Good |  |  | 
| Lake Mohawksin | Lake Mohawksin |  |  | 1508.34 | IMPOUNDMENT | 1515400 | Lincoln | 2025 | Poor |  |  | 
| Lake Samway | Lake Samway |  |  | 36.30 | LAKE | 996000 | Oneida | 2017 | Good |  |  | 
| Laurel Lake | Laurel Lake |  |  | 1.68 | LAKE | 997100 | Lincoln |  | Unknown |  |  | 
| Lily Lake | Lily Lake |  |  | 42.00 | LAKE | 997800 | Lincoln | 2017 | Good |  |  | 
| Lily Lake | Lily Lake |  |  | 42.54 | LAKE | 997900 | Oneida | 2017 | Unknown |  |  | 
| Long Lake | Long Lake |  |  | 64.50 | LAKE | 1001100 | Oneida | 2017 | Good |  |  | 
| Loon Lake | Loon Lake |  |  | 21.81 | LAKE | 1001500 | Oneida | 2017 | Good |  |  | 
| Mazy Lake | Mazy Lake |  |  | 11.49 | LAKE | 1003400 | Oneida | 2012 | Good |  |  | 
| Mequithy Lake | Mequithy Lake |  |  | 13.05 | LAKE | 1004300 | Lincoln | 2015 | Good |  |  | 
| Mirror Lake | Mirror Lake |  |  | 19.88 | LAKE | 1005300 | Oneida | 2017 | Good |  |  | 
| Muskellunge Creek | Muskellunge Creek | 0.00 | 5.39 | 5.39 | RIVER | 1555000 | Lincoln | 2025 | Unknown |  |  | 
| Muskellunge Lake | Muskellunge Lake |  |  | 159.71 | LAKE | 1555500 | Lincoln | 2025 | Good |  |  | 
| Nose Lake | Nose Lake |  |  | 42.52 | LAKE | 1008200 | Oneida | 2025 | Excellent |  |  | 
| Perch Lake | Perch Lake |  |  | 14.57 | LAKE | 1010900 | Oneida | 2017 | Good |  |  | 
| Prune Lake | Prune Lake |  |  | 26.61 | LAKE | 1013300 | Oneida | 2017 | Good |  |  | 
| Rhinelander Flowage | Rhinelander Flowage |  |  | 1371.89 | IMPOUNDMENT | 1580100 | Oneida | 2025 | Good |  |  | 
| Round Lake | Round Lake |  |  | 10.92 | LAKE | 1014600 | Oneida | 2016 | Good |  |  | 
| Sawdys Pond | Sawdys Pond |  |  | 6.71 | LAKE | 4000008 | Lincoln | 2022 | Unknown |  |  | 
| Slater Lake | Slater Lake |  |  | 5.00 | LAKE | 1018100 | Lincoln | 2013 | Good |  |  | 
| Smith Lake | Smith Lake |  |  | 30.53 | LAKE | 1555200 | Lincoln | 2017 | Excellent |  |  | 
| Spring Creek | Spring Creek | 0.00 | 1.37 | 1.37 | RIVER | 1562000 | Lincoln | 2011 | Unknown | CLASS I | ERW | 
| Spruce Lake | Spruce Lake |  |  | 5.55 | LAKE | 1019300 | Oneida | 2012 | Fair |  |  | 
| Spur Lake | Spur Lake |  |  | 48.96 | LAKE | 1019400 | Oneida | 2019 | Good |  |  | 
| Squash Lake | Squash Lake |  |  | 397.69 | LAKE | 1019500 | Oneida | 2025 | Excellent |  |  | 
| Tomahawk River | Tomahawk River | 0.00 | 5.00 | 5.00 | RIVER | 1515800 | Lincoln, Oneida, Vilas | 2022 | Unknown |  |  | 
| Trout Creek | Trout Creek (T35N R07E S12 NW NW) | 0.00 | 2.90 | 2.90 | RIVER | 1562700 | Lincoln, Oneida | 2015 | Excellent | CLASS I | ERW | 
| Trout Creek | Trout Creek | 2.90 | 4.21 | 1.31 | RIVER | 1562700 | Lincoln, Oneida |  | Unknown | CLASS II |  | 
| Twin Lakes | Twin Lakes |  |  | 4.39 | LAKE | 1007400 | Oneida | 2010 | Unknown |  |  | 
| Twin Lakes | Twin Lakes |  |  | 2.35 | LAKE | 1015400 | Oneida |  | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 0.07 | LAKE | 1562800 | Lincoln |  | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 0.27 | LAKE | 1563000 | Lincoln |  | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 0.57 | LAKE | 1567600 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Creek 3-1 (T35n,R7e,S3 Sene | 0.00 | 0.58 | 0.58 | RIVER | 1562900 | Lincoln |  | Unknown | CLASS II |  | 
| Unnamed | Unnamed Creek 31-15 (T36n,R8e,S31,Swse | 0.00 | 1.62 | 1.62 | RIVER | 1563900 | Oneida |  | Unknown | CLASS I | ERW | 
| Unnamed | Un Lake |  |  | 2.29 | LAKE | 1098400 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.13 | LAKE | 1098500 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.14 | LAKE | 1098600 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.28 | LAKE | 1098700 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 2.20 | LAKE | 1098800 | Lincoln |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 14.76 | LAKE | 1098820 | Lincoln |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 7.22 | LAKE | 1099300 | Lincoln | 2010 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.93 | LAKE | 1099800 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.87 | LAKE | 1100100 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.76 | LAKE | 1100200 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.86 | LAKE | 1100300 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.56 | LAKE | 1100400 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.71 | LAKE | 1100500 | Lincoln |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 25.66 | LAKE | 1101300 | Lincoln | 2015 | Good |  |  | 
| Unnamed | Un Lake |  |  | 2.70 | LAKE | 1101400 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.36 | LAKE | 1101500 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 3.62 | LAKE | 1101600 | Lincoln |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 3.09 | LAKE | 1111100 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.09 | LAKE | 1111200 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.28 | LAKE | 1111300 | Oneida |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 15.63 | LAKE | 1111600 | Oneida | 2010 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.23 | LAKE | 1111700 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.51 | LAKE | 1111800 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.67 | LAKE | 1111900 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.36 | LAKE | 1112000 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 5.76 | LAKE | 1113100 | Oneida | 2010 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 6.25 | LAKE | 1113200 | Oneida | 2010 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.90 | LAKE | 1113300 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.24 | LAKE | 1113400 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.42 | LAKE | 1113500 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.92 | LAKE | 1113900 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 2.08 | LAKE | 1114000 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 4.33 | LAKE | 1114100 | Oneida | 2010 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 2.73 | LAKE | 1114200 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.95 | LAKE | 1114800 | Oneida |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.38 | LAKE | 1562600 | Lincoln |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 3.24 | LAKE | 5517936 | Oneida | 2008 | Unknown |  |  | 
| Unnamed | Local Water |  |  | 41.22 | LAKE | 5520946 | Lincoln | 2025 | Unknown |  |  | 
| Unnamed | Unnamed Water adjacent to Lake Alice |  |  | 0.21 | LAKE | 5521133 | Lincoln | 2008 | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.28 | LAKE | 5521230 | Lincoln |  | Unknown |  |  | 
| Washburn Lake | Washburn Lake |  |  | 85.03 | LAKE | 1178000 | Oneida | 2025 | Good |  |  | 
| Wisconsin River | Wisconsin River | 304.41 | 324.87 | 20.46 | RIVER | 1179900 | Adams, Columbia, Crawford, Dane, Grant, Iowa, Juneau, Lincoln, Marathon, Oneida, Portage, Richland, Sauk, Vilas, Wood | 2024 | Good |  |  | 
| Wisconsin River | Wisconsin River | 324.87 | 348.01 | 23.14 | RIVER | 1179900 | Adams, Columbia, Crawford, Dane, Grant, Iowa, Juneau, Lincoln, Marathon, Oneida, Portage, Richland, Sauk, Vilas, Wood | 2025 | Good |  |  | 
| Wisconsin River - Unnamed Slough | Wisconsin River - Unnamed Slough
 |  |  | 237.92 | LAKE | 1554900 | Lincoln | 2025 | Unknown |  |  | 
| Wolf Lake | Wolf Lake |  |  | 86.64 | LAKE | 1563200 | Oneida | 2017 | Excellent |  |  |