| Chambers Creek | Chambers Creek | 0.00 | 2.90 | CLASS I | Sheboygan | Map Link |
| Gooseville Creek | Gooseville Creek | 0.00 | 0.88 | CLASS I | Sheboygan | Map Link |
| Gooseville Creek | Gooseville Creek (South Branch) | 0.88 | 2.36 | CLASS II | Sheboygan | Map Link |
| Jackson Creek | Jackson Creek | 0.00 | 1.80 | CLASS II | Sheboygan | Map Link |
| La Budde Creek | Labudde Creek | 0.00 | 3.05 | CLASS II | Sheboygan | Map Link |
| La Budde Creek | Labudde Creek | 3.05 | 6.97 | CLASS I | Sheboygan | Map Link |
| Melius Creek | Melius Creek | 0.00 | 3.30 | CLASS II | Sheboygan | Map Link |
| Mill Creek | Mill Creek | 0.00 | 1.80 | CLASS I | Sheboygan | Map Link |
| Millhome Creek | Millhome Creek | 0.00 | 1.97 | CLASS I | Manitowoc,Sheboygan | Map Link |
| Mullet River | Mullet River | 17.76 | 23.67 | CLASS II | Sheboygan | Map Link |
| North Branch Milwaukee River | Nichols Creek (N. B. Milw R) | 23.48 | 27.80 | CLASS I | Sheboygan | Map Link |
| Onion River | Ben Nutt Creek | 31.81 | 41.88 | CLASS I | Sheboygan | Map Link |
| Schuett Creek | Schuett Creek | 0.00 | 0.63 | CLASS I | Sheboygan | Map Link |
| Un Spring | Glenbeulah Springs | | | CLASS II | Sheboygan | Map Link |
| Unnamed | North Branch Gooseville Creek | 0.00 | 1.07 | CLASS I | Sheboygan | Map Link |
| Unnamed | Willow Creek | 0.00 | 1.95 | CLASS II | Sheboygan | Map Link |
| Watercress Creek | Watercress Creek | 0.00 | 5.00 | CLASS II | Sheboygan,Fond du Lac | Map Link |