| Adams Lake | Adams Lake |  |  | 30.25 | LAKE | 267800 | Portage | 2025 | Good |  |  | 
| Allen Creek | Allen Creek | 0.00 | 3.72 | 3.72 | RIVER | 263300 | Portage, Waupaca | 2025 | Good | CLASS I | ERW | 
| Amherst Millpond | Amherst Millpond |  |  | 37.52 | IMPOUNDMENT | 268200 | Portage | 2025 | Good |  |  | 
| Bass Lake | Bass Lake |  |  | 2.89 | LAKE | 5551281 | Waupaca | 2019 | Unknown |  |  | 
| Bear Creek | Bear Creek | 0.00 | 1.94 | 1.94 | RIVER | 267400 | Portage | 2025 | Good | CLASS II |  | 
| Bear Creek | Bear Creek | 1.94 | 7.23 | 5.29 | RIVER | 267400 | Portage | 2025 | Poor | CLASS I | ERW | 
| Bear Lake | Bear Lake |  |  | 29.45 | LAKE | 181900 | Portage | 2025 | Good |  |  | 
| Beasley Lake | Beasley Lake |  |  | 13.28 | LAKE | 262300 | Waupaca | 2023 | Excellent |  |  | 
| Boelter Lake | Boelter (Marshfield) Lake |  |  | 22.61 | LAKE | 182700 | Portage | 2014 | Unknown |  |  | 
| Carden Feeder | Carden Feeder Creek | 0.00 | 0.90 | 0.90 | RIVER | 262000 | Portage | 2024 | Unknown | CLASS I | ERW | 
| Cary Pond | Cary Pond |  |  | 26.00 | IMPOUNDMENT | 258400 | Waupaca | 2012 | Unknown |  |  | 
| Collins Lake | Collins Lake (Collins Park Beach) | 0.00 | 0.03 | 0.03 | INLAND BEACH | 270200 | Portage | 2023 | Unknown |  |  | 
| Collins Lake | Collins (Fish) Lake |  |  | 42.93 | LAKE | 270200 | Portage | 2025 | Poor |  |  | 
| Columbia Lake | Cary Millpond |  |  | 83.95 | LAKE | 262400 | Waupaca | 2025 | Good |  |  | 
| Crystal Lake | Crystal Lake |  |  | 33.27 | LAKE | 184100 | Waupaca | 2018 | Good |  |  | 
| Crystal River | Crystal River | 0.00 | 2.43 | 2.43 | RIVER | 258200 | Waupaca | 2016 | Good |  |  | 
| Crystal River | Crystal River | 2.43 | 12.20 | 9.77 | RIVER | 258200 | Waupaca | 2020 | Poor | CLASS II |  | 
| Dake Lake | Dake Lake (Chain) |  |  | 35.01 | LAKE | 264700 | Waupaca | 2024 | Excellent |  |  | 
| Deans Lake | Deans Lake |  |  | 5.92 | LAKE | 261900 | Portage | 2015 | Excellent |  |  | 
| East Lake | East Wolf Lake |  |  | 11.67 | LAKE | 185600 | Portage |  | Unknown |  |  | 
| Ebert Lake | Eberts Lake |  |  | 12.48 | LAKE | 267700 | Portage | 2024 | Fair |  |  | 
| Ell Lake | Ell Lake (L Lake) |  |  | 22.63 | LAKE | 186000 | Portage | 2021 | Suspected Poor |  |  | 
| Emmons Creek | Emmons Creek | 0.00 | 7.74 | 7.74 | RIVER | 261300 | Portage, Waupaca | 2025 | Good | CLASS I | ORW | 
| Emmons Lake | Emmons Lake |  |  | 1.99 | LAKE | 261500 | Waupaca |  | Unknown |  |  | 
| Fish Lake | Fish Lake |  |  | 12.42 | LAKE | 186100 | Waushara | 2010 | Unknown |  |  | 
| Fountain Lake | Fountain Lake |  |  | 16.49 | LAKE | 262200 | Portage | 2025 | Excellent |  |  | 
| George Lake | George Lake |  |  | 5.91 | LAKE | 265400 | Waupaca | 2021 | Good |  |  | 
| Hartman Creek | Hartman Creek | 0.00 | 1.61 | 1.61 | RIVER | 263000 | Waupaca | 2025 | Poor | CLASS II |  | 
| Hartman Lake | Hartman Lake |  |  | 17.78 | LAKE | 263900 | Waupaca | 2017 | Excellent |  |  | 
| Hintz Lake | Hintz Lake |  |  | 41.22 | LAKE | 187900 | Portage | 2012 | Unknown |  |  | 
| Holman Lake | Holman Lake |  |  | 17.16 | LAKE | 188100 | Waupaca | 2012 | Unknown |  |  | 
| Huntleys Lake | Huntleys Lake |  |  | 2.21 | LAKE | 188400 | Portage |  | Unknown |  |  | 
| Jim Lake | Jim Lake |  |  | 5.48 | LAKE | 188800 | Portage | 2001 | Unknown |  |  | 
| Junction Lake | Junction Lake |  |  | 16.61 | LAKE | 259200 | Waupaca | 2012 | Unknown |  |  | 
| Knight Lake | Knight Lake |  |  | 15.27 | LAKE | 262700 | Waupaca | 2023 | Good |  |  | 
| Kranski Lake | Kranski Lake |  |  | 5.64 | LAKE | 270000 | Portage | 2017 | Good |  |  | 
| Lake Bingo | Bingo Lake |  |  | 6.94 | LAKE | 189700 | Portage | 2010 | Unknown |  |  | 
| Lake Emily | Lake Emily Park Beach | 0.00 | 0.06 | 0.06 | INLAND BEACH | 189800 | Portage | 2025 | Unknown |  |  | 
| Lake Emily | Emily Lake |  |  | 107.53 | LAKE | 189800 | Portage | 2025 | Excellent |  |  | 
| Lake Julia | Lake Julia Wards |  |  | 13.21 | LAKE | 190000 | Portage | 2011 | Good |  |  | 
| Lake Lime | Lime Lake |  |  | 45.42 | LAKE | 190100 | Portage | 2025 | Good |  |  | 
| Lake Nymphaea | Un Lake |  |  | 1.56 | LAKE | 203800 | Waupaca | 2013 | Unknown |  |  | 
| Lake Orlando | Orlando Lake |  |  | 4.23 | RESERVOIR | 262600 | Waupaca | 2018 | Good |  |  | 
| Limekiln Lake | Limekiln Lake |  |  | 29.78 | LAKE | 264900 | Waupaca | 2019 | Excellent |  |  | 
| Little Hope Millpond | Little Hope Millpond |  |  | 20.16 | IMPOUNDMENT | 258900 | Waupaca | 2015 | Unknown |  |  | 
| Long Lake | Long Lake |  |  | 112.29 | LAKE | 261200 | Waupaca | 2025 | Excellent |  |  | 
| Mack Creek | Mack (Brown. Spring) Creek | 0.00 | 1.96 | 1.96 | RIVER | 267300 | Portage | 2021 | Poor | CLASS I | ERW | 
| Manomin Lake | Manomin Lake |  |  | 6.68 | LAKE | 262800 | Waupaca | 2023 | Excellent |  |  | 
| Marl Lake | Marl Lake |  |  | 13.98 | LAKE | 264100 | Waupaca | 2025 | Excellent |  |  | 
| McCrossen Lake | Mccrossen Lake |  |  | 31.33 | LAKE | 265100 | Waupaca | 2024 | Excellent |  |  | 
| Meyers Lake | Meyers Lake |  |  | 19.38 | LAKE | 268400 | Portage | 2017 | Good |  |  | 
| Miner Lake | Miner Lake |  |  | 38.82 | LAKE | 264800 | Waupaca | 2022 | Excellent |  |  | 
| Minister Lake | Minister (Preacher) Lake |  |  | 16.73 | LAKE | 192800 | Portage | 2007 | Unknown |  |  | 
| Mirror Lake | Mirror Lake |  |  | 13.94 | LAKE | 258700 | Waupaca | 2025 | Poor |  |  | 
| Mud Lake | Mud Lake |  |  | 15.02 | LAKE | 193300 | Waupaca |  | Unknown |  |  | 
| Mud Lake | Mud Lake |  |  | 10.65 | LAKE | 259800 | Waupaca | 2023 | Unknown |  |  | 
| Mud Lake | Mud Lake |  |  | 6.47 | LAKE | 193500 | Portage | 2010 | Unknown |  |  | 
| Mudhole Lake | Mudhole Lake |  |  | 19.86 | LAKE | 270500 | Portage | 2011 | Good |  |  | 
| Murry Creek | Murry Creek (N Fork Radley Cr) | 0.00 | 5.09 | 5.09 | RIVER | 260200 | Portage, Waupaca | 2025 | Good | CLASS I | ERW | 
| Mynyard Lake | Mynyard Lake |  |  | 10.07 | LAKE | 260000 | Waupaca | 2015 | Good |  |  | 
| Naylor Creek | Naylor Creek | 0.00 | 1.62 | 1.62 | RIVER | 259000 | Waupaca |  | Unknown | CLASS I | ERW | 
| Nelsonville Pond | Nelsonville Pond |  |  | 31.00 | LAKE | 268600 | Portage | 2023 | Unknown |  |  | 
| Nessling Lake | Nessling Lake |  |  | 10.14 | LAKE | 265200 | Waupaca | 2017 | Excellent |  |  | 
| Newsome Lake | Newsome Pond |  |  | 2.61 | LAKE | 194400 | Waupaca |  | Unknown |  |  | 
| North Emmons Lake | North Emmons Lake |  |  | 1.17 | LAKE | 261600 | Waupaca |  | Unknown |  |  | 
| Oesterle Lake | Oesterle Lake |  |  | 20.17 | LAKE | 194900 | Portage |  | Fair |  |  | 
| Old Taylor Lake | Old Taylor Lake |  |  | 42.47 | LAKE | 195000 | Waupaca | 2025 | Unknown |  |  | 
| Old Taylor Lake | Old Taylor Lake |  |  | 42.47 | LAKE | 195000 | Waupaca | 2025 | Unknown |  |  | 
| Onland Lake | Onland Lake |  |  | 47.79 | LAKE | 195100 | Portage | 2025 | Good |  |  | 
| Ostrowski Lake | Ostrowski Lake |  |  | 5.23 | LAKE | 268900 | Portage | 2011 | Suspected Poor |  |  | 
| Otter Lake | Otter Lake |  |  | 15.23 | LAKE | 265700 | Waupaca | 2025 | Excellent |  |  | 
| Ottman Lake | Ottman Lake |  |  | 13.29 | LAKE | 264500 | Waupaca | 2016 | Good |  |  | 
| Pallen Lake | Pallen Lake |  |  | 12.80 | LAKE | 195300 | Portage | 2015 | Good |  |  | 
| Peters Lake | Lutz Peters Lake |  |  | 11.18 | LAKE | 195800 | Portage | 2015 | Unknown |  |  | 
| Pickerel Lake | Pickerel Lake |  |  | 39.42 | LAKE | 195900 | Portage | 2025 | Good |  |  | 
| Pierces Lake | Pierces Lake |  |  | 1.74 | LAKE | 196000 | Portage |  | Unknown |  |  | 
| Pine Lake | Pine Lake |  |  | 22.91 | LAKE | 196200 | Portage | 2015 | Unknown |  |  | 
| Pleasant Lake | Pleasant Lake |  |  | 11.89 | LAKE | 196300 | Portage | 2015 | Suspected Poor |  |  | 
| Poncho Creek | Poncho Creek | 0.00 | 4.24 | 4.24 | RIVER | 269600 | Portage | 2025 | Excellent | CLASS I | ERW | 
| Pope Lake | Pope Lake |  |  | 14.29 | LAKE | 262900 | Waupaca | 2025 | Poor |  |  | 
| Poplar Lake | Poplar Lake |  |  | 0.17 | LAKE | 196400 | Portage |  | Good |  |  | 
| Radley Creek | Radley Creek | 0.00 | 11.51 | 11.51 | RIVER | 259300 | Portage, Waupaca | 2025 | Good | CLASS I | ORW | 
| Rainbow Lake | Rainbow Lake (Chain) |  |  | 190.62 | LAKE | 265300 | Waupaca | 2024 | Good |  |  | 
| Reton Lake | Reton Lake |  |  | 25.67 | LAKE | 197000 | Portage | 2014 | Fair |  |  | 
| Riley Lake | Riley Rough Lake |  |  | 8.14 | LAKE | 197100 | Portage | 2015 | Fair |  |  | 
| Round Lake | Round Lake |  |  | 14.17 | LAKE | 197400 | Waupaca | 2017 | Good |  |  | 
| Round Lake | Rainbow Lake |  |  | 73.07 | LAKE | 265000 | Waupaca | 2024 | Good |  |  | 
| Sandbar Lakes | Sand Bar Lake |  |  | 13.47 | LAKE | 185500 | Waupaca | 2001 | Unknown |  |  | 
| Sandbar Lakes | Sandbar Lakes |  |  | 16.63 | LAKE | 240200 | Waupaca | 2015 | Fair |  |  | 
| Shadow Lake | Shadow Lake |  |  | 44.07 | LAKE | 258600 | Waupaca | 2025 | Poor |  |  | 
| Silver Lake | Silver Lake |  |  | 6.31 | LAKE | 198700 | Portage | 2001 | Unknown |  |  | 
| Silver Lake | Silver Lake (Anderson) |  |  | 34.66 | LAKE | 198900 | Waupaca | 2016 | Good |  |  | 
| Skunk Lake | Skunk Lake |  |  | 20.65 | LAKE | 199000 | Portage | 2016 | Fair |  |  | 
| Spring Creek | Spring (Howard) Creek | 0.00 | 2.82 | 2.82 | RIVER | 266800 | Portage | 2016 | Good | CLASS I | ERW | 
| Spring Creek | Spring (Howard) Creek | 2.82 | 4.46 | 1.64 | RIVER | 266800 | Portage | 2025 | Unknown |  |  | 
| Spring Lake | Spring Lake |  |  | 38.17 | SPRINGS-LAKE | 267200 | Portage | 2025 | Poor |  |  | 
| Stedman Creek | Stedman Creek | 0.00 | 2.45 | 2.45 | RIVER | 266700 | Portage | 2016 | Good | CLASS I | ERW | 
| Stoltenburg Creek | Stoltenberg Creek | 0.00 | 0.63 | 0.63 | RIVER | 268700 | Portage | 2025 | Good | CLASS I | ERW | 
| Stoltenburg Creek | Stoltenberg Creek | 0.63 | 2.80 | 2.17 | RIVER | 268700 | Portage | 2021 | Unknown |  |  | 
| Stoltenburg Lake | Stoltenburg Lake |  |  | 16.70 | LAKE | 199400 | Portage | 2016 | Fair |  |  | 
| Stratton Lake | Stratton Lake |  |  | 63.45 | LAKE | 259600 | Waupaca | 2025 | Excellent |  |  | 
| Sunset Lake | Sunset Lake Park Beach | 0.00 | 0.06 | 0.06 | INLAND BEACH | 199700 | Portage | 2025 | Unknown |  |  | 
| Sunset Lake | Sunset Lake |  |  | 63.19 | LAKE | 199700 | Portage | 2025 | Good |  |  | 
| Sunset Lake | Sunset Lake |  |  | 30.34 | LAKE | 265500 | Waupaca | 2018 | Good |  |  | 
| Taylor Lake | Taylor Lake |  |  | 42.78 | LAKE | 265600 | Waupaca | 2025 | Good |  |  | 
| Thomas Lake | Thomas Lake |  |  | 31.53 | LAKE | 200300 | Portage | 2025 | Good |  |  | 
| Tomorrow River | Tomorrow/Waupaca River | 18.45 | 32.30 | 13.85 | RIVER | 270400 | Portage | 2025 | Poor | CLASS I | ORW | 
| Tomorrow River | Tomorrow/Waupaca River Headwaters | 32.30 | 34.07 | 1.77 | RIVER | 270400 | Portage | 2024 | Good | CLASS I | ORW | 
| Turtle Lake | Virgin Turtle Lake |  |  | 12.63 | LAKE | 200600 | Portage | 2011 | Suspected Poor |  |  | 
| Twin Lakes | Twin Lakes |  |  | 8.58 | LAKE | 200900 | Waushara | 2018 | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 3.92 | LAKE | 237300 | Waupaca |  | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 6.24 | LAKE | 237400 | Waupaca | 2001 | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 3.77 | LAKE | 237600 | Waupaca | 2010 | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 0.45 | LAKE | 237700 | Waupaca |  | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 13.98 | LAKE | 237900 | Portage | 2009 | Unknown |  |  | 
| Un Spring | Un Spring |  |  | 1.34 | LAKE | 266400 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.02 | 0.02 | RIVER | 5020552 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.02 | 0.02 | RIVER | 5021660 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.04 | 0.04 | RIVER | 261400 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.06 | 0.06 | RIVER | 5018261 | Portage |  | Unknown |  |  | 
| Unnamed | Hartman Creek State Park Beach, Unnamed T21n R11e S05-07 | 0.00 | 0.07 | 0.07 | INLAND BEACH | 263200 | Waupaca | 2025 | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.11 | 0.11 | RIVER | 5017164 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.11 | 0.11 | RIVER | 5020474 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.12 | 0.12 | RIVER | 5020031 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.13 | 0.13 | RIVER | 259700 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.13 | 0.13 | RIVER | 5015983 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.15 | 0.15 | RIVER | 5016755 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.22 | 0.22 | RIVER | 5020530 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.26 | 0.26 | RIVER | 5016204 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.26 | 0.26 | RIVER | 5019966 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.30 | 0.30 | RIVER | 5018486 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.31 | 0.31 | RIVER | 259900 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.31 | 0.31 | RIVER | 264400 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.35 | 0.35 | RIVER | 269900 | Portage |  | Unknown |  |  | 
| Unnamed | Outlet of Stratton Lake | 0.00 | 0.39 | 0.39 | RIVER | 259400 | Waupaca | 2017 | Good |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.40 | 0.40 | RIVER | 5020959 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.41 | 0.41 | RIVER | 269800 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.44 | 0.44 | RIVER | 260700 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.44 | 0.44 | RIVER | 5020414 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.51 | 0.51 | RIVER | 270300 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.53 | 0.53 | RIVER | 260100 | Waupaca | 2021 | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.53 | 0.53 | RIVER | 5019906 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.55 | 0.55 | RIVER | 5020637 | Waupaca | 2018 | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.60 | 0.60 | RIVER | 260800 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.61 | 0.61 | RIVER | 258500 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.71 | 0.71 | RIVER | 265800 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.76 | 0.76 | RIVER | 269000 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.81 | 0.81 | RIVER | 267500 | Portage |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 0.95 | 0.95 | RIVER | 5020640 | Waupaca | 2021 | Poor |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 1.14 | 1.14 | RIVER | 257450 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 1.55 | 1.55 | RIVER | 266300 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 1.61 | 1.61 | RIVER | 5020550 | Waupaca | 2021 | Poor |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 1.71 | 1.71 | RIVER | 258000 | Waupaca | 2021 | Poor |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 1.99 | 1.99 | RIVER | 270100 | Portage | 2023 | Unknown |  |  | 
| Unnamed | Unnamed Trib to Waupaca River | 0.00 | 2.14 | 2.14 | RIVER | 258100 | Waupaca | 2021 | Good |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 2.60 | 2.60 | RIVER | 257900 | Waupaca | 2021 | Poor |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 2.70 | 2.70 | RIVER | 5021203 | Waupaca | 2021 | Good |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 2.88 | 2.88 | RIVER | 257800 | Waupaca | 2021 | Poor |  |  | 
| Unnamed | Unnamed Trib to Waupaca River | 0.00 | 3.37 | 3.37 | RIVER | 5021414 | Waupaca | 2021 | Poor |  |  | 
| Unnamed | Unnamed Stream | 0.00 | 4.93 | 4.93 | RIVER | 266500 | Portage, Waupaca | 2024 | Fair | CLASS I |  | 
| Unnamed | Duck Lake |  |  | 6.06 | LAKE | 185200 | Waupaca | 2010 | Unknown |  |  | 
| Unnamed | Jaquith Lake |  |  | 9.35 | LAKE | 188600 | Waupaca | 2001 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.72 | LAKE | 201300 | Waushara |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 3.80 | LAKE | 201400 | Waushara |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.47 | LAKE | 202400 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.80 | LAKE | 202450 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 3.15 | LAKE | 202500 | Waupaca |  | Unknown |  |  | 
| Unnamed | Unamed |  |  | 10.52 | LAKE | 202550 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 5.65 | LAKE | 202600 | Waupaca | 2015 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.45 | LAKE | 202700 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 0.62 | LAKE | 202800 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 2.55 | LAKE | 203400 | Portage |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 2.82 | LAKE | 203600 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.43 | LAKE | 203900 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 2.02 | LAKE | 204000 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.19 | LAKE | 204100 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.87 | LAKE | 204500 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.59 | LAKE | 204600 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 4.69 | LAKE | 206000 | Portage |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 15.73 | LAKE | 206100 | Portage |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 12.53 | LAKE | 207900 | Portage | 2017 | Fair |  |  | 
| Unnamed | Un Lake |  |  | 8.17 | LAKE | 209750 | Portage | 2011 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.53 | LAKE | 259100 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 12.84 | RESERVOIR | 263700 | Waupaca | 2016 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 1.87 | LAKE | 264000 | Waupaca |  | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 3.60 | LAKE | 267600 | Portage | 2008 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 12.12 | LAKE | 269700 | Portage | 2010 | Unknown |  |  | 
| Unnamed | Un Lake |  |  | 4.49 | LAKE | 1034100 | Waushara |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 11.22 | LAKE | 5543961 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.64 | LAKE | 5544354 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.27 | LAKE | 5544844 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 9.65 | LAKE | 5545741 | Portage | 2014 | Unknown |  |  | 
| Unnamed | Local Water |  |  | 4.88 | LAKE | 5547404 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.07 | LAKE | 5547411 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 4.87 | LAKE | 5547543 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 9.23 | LAKE | 5548938 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 3.04 | LAKE | 5550413 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.98 | LAKE | 5550503 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 4.23 | LAKE | 5550605 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 10.27 | LAKE | 5550765 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 7.47 | LAKE | 5550851 | Waupaca | 2014 | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.75 | LAKE | 5550909 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.48 | LAKE | 5551124 | Portage |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.29 | LAKE | 5551342 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 2.10 | LAKE | 5551649 | Waupaca |  | Unknown |  |  | 
| Unnamed | Local Water |  |  | 11.39 | LAKE | 5551736 | Waupaca | 2012 | Good |  |  | 
| Unnamed | Local Water |  |  | 2.07 | LAKE | 5552156 | Waupaca |  | Unknown |  |  | 
| Upper Spring Creek | Upper Spring (Upper Howard) Creek | 0.00 | 1.19 | 1.19 | RIVER | 267100 | Portage | 2016 | Excellent | CLASS I | ERW | 
| Waupaca Millpond | Waupaca Millpond |  |  | 16.43 | LAKE | 266200 | Waupaca | 2018 | Good |  |  | 
| Waupaca River | Waupaca River | 0.00 | 5.45 | 5.45 | RIVER | 257400 | Portage, Waupaca | 2025 | Good |  |  | 
| Waupaca River | Waupaca River | 7.21 | 17.25 | 10.04 | RIVER | 257400 | Portage, Waupaca | 2017 | Good |  |  | 
| Waupaca River | Waupaca River | 17.25 | 32.77 | 15.52 | RIVER | 257400 | Portage, Waupaca | 2024 | Poor | CLASS II | ERW | 
| Waupaca River | Tomorrow/Waupaca River | 32.77 | 38.58 | 5.81 | RIVER | 257400 | Portage, Waupaca | 2021 | Poor | CLASS I | ORW | 
| Waupaca River | Tomorrow/Waupaca River | 38.58 | 45.98 | 7.40 | RIVER | 257400 | Portage, Waupaca | 2025 | Poor | CLASS II | ERW | 
| Waupaca River | Tomorrow/Waupaca River | 46.86 | 48.17 | 1.31 | RIVER | 257400 | Portage, Waupaca | 2025 | Good | CLASS II | ERW | 
| Waupaca River | Tomorrow/Waupaca River | 48.17 | 50.07 | 1.90 | RIVER | 257400 | Portage, Waupaca | 2025 | Excellent | CLASS I | ORW | 
| Wenckus Lake | Un Lake |  |  | 14.90 | LAKE | 203700 | Waupaca | 2001 | Unknown |  |  | 
| Weyauwega Lake | Weyauwega Lake |  |  | 253.30 | IMPOUNDMENT | 257700 | Waupaca | 2024 | Fair |  |  | 
| Wolf Lake | Wolf Lake Beach, Portage Co | 0.00 | 0.04 | 0.04 | INLAND BEACH | 241100 | Portage | 2025 | Unknown |  |  | 
| Wolf Lake | Wolf Lake |  |  | 22.05 | LAKE | 241100 | Portage | 2025 | Poor |  |  | 
| Wolf River | Wolf River-Main Stem | 9.45 | 42.00 | 32.55 | RIVER | 241300 | Forest, Langlade, Menominee, Oneida, Outagamie, Shawano, Waupaca, Winnebago | 2025 | Good |  |  | 
| Wolf River | Wolf River | 21.26 | 24.37 | 3.11 | RIVER | 241300 | Forest, Langlade, Menominee, Oneida, Outagamie, Shawano, Waupaca, Winnebago | 2015 | Good |  |  | 
| Youngs Lake | Youngs Lake |  |  | 2.99 | LAKE | 264300 | Waupaca | 2022 | Good |  |  |