| South Branch Trempealeau River | S. Branch Trempealeau R. | 0.00 | 8.70 | 1806900 | River | Jackson | Sediment/Total Suspended Solids | NA | Water Delisted | Delisted 2008 |
| Trump Coulee Creek | Trump Coulee Creek | 4.11 | 7.71 | 1800600 | River | Jackson | Total Phosphorus | Low DO | 303d Listed | Low |
| Trump Coulee Creek | Trump Coulee Creek | 4.11 | 7.71 | 1800600 | River | Jackson | Sediment/Total Suspended Solids | Degraded Habitat | TMDL Approved | Not Applicable |
| Trump Coulee Creek | Trump Coulee Creek | 3.77 | 4.11 | 1800600 | River | Jackson | Total Phosphorus | Low DO | 303d Listed | Low |
| Trump Coulee Creek | Trump Coulee Creek | 3.77 | 4.11 | 1800600 | River | Jackson | Sediment/Total Suspended Solids | Degraded Habitat | TMDL Approved | Not Applicable |
| Trempealeau River | Trempealeau River | 51.72 | 61.32 | 1769900 | River | Trempealeau | Total Phosphorus | High Phosphorus Levels | 303d Listed | Low |
| Vosse Coulee Creek | Vosse Coulee Creek | 0.00 | 6.27 | 1801800 | River | Jackson, Trempealeau | Total Phosphorus | High Phosphorus Levels | 303d Listed | Low |
| Trump Coulee Creek | Trump Coulee Creek | 0.00 | 3.77 | 1800600 | River | Jackson, Trempealeau | Total Phosphorus | Low DO | 303d Listed | Low |
| Trump Coulee Creek | Trump Coulee Creek | 0.00 | 3.77 | 1800600 | River | Jackson, Trempealeau | Sediment/Total Suspended Solids | Degraded Habitat | TMDL Approved | Not Applicable |
| Trempealeau River | Trempealeau River | 69.85 | 81.51 | 1769900 | River | Jackson | Total Phosphorus | High Phosphorus Levels | 303d Listed | Low |
| Trempealeau River | Trempealeau River | 31.28 | 61.32 | 1769900 | River | Trempealeau | Total Phosphorus | High Phosphorus Levels | 303d Listed | Low |
| Trempealeau River | Trempealeau River | 61.98 | 69.85 | 1769900 | River | Jackson, Trempealeau | Total Phosphorus | High Phosphorus Levels | 303d Listed | Low |
| French Creek | French Creek | 0.00 | 4.00 | 1802900 | River | Jackson | Sediment/Total Suspended Solids | NA | Water Delisted | Delisted 2008 |