| Fox River | Fox River | 126.83 | 134.25 | 117900 | River | Green Lake, Marquette | Total Phosphorus | Degraded Biological Community | TMDL Approved | Not Applicable |
| Fox-Wis Portage Canal | Portage Canal | | | 179500 | Bay/Harbor | Columbia | Mercury | Mercury Contaminated Sediments | 303d Listed | Low |
| Fox-Wis Portage Canal | Portage Canal | | | 179500 | Bay/Harbor | Columbia | Lead | Lead Contaminated Sediments | 303d Listed | Low |
| Fox-Wis Portage Canal | Portage Canal | | | 179500 | Bay/Harbor | Columbia | PCBs | PCBs Contaminated Fish Tissue, PCB Contaminated Sediments | 303d Listed | Low |
| Spring Creek | Spring Creek | 0.00 | 5.32 | 172400 | River | Columbia | Total Phosphorus | Impairment Unknown | 303d Listed | Low |
| Fox River | Upper Fox River | 162.10 | 166.56 | 117900 | River | Columbia | PCBs | PCBs Contaminated Fish Tissue | 303d Listed | Low |
| Fox River | Upper Fox River | 145.65 | 162.10 | 117900 | River | Columbia, Marquette | PCBs | PCBs Contaminated Fish Tissue | 303d Listed | Low |
| Puckaway Lake | Puckaway Lake | | | 158700 | Lake | Green Lake, Marquette | Sediment/Total Suspended Solids | Degraded Habitat | TMDL Approved | Not Applicable |
| Puckaway Lake | Puckaway Lake | | | 158700 | Lake | Green Lake, Marquette | Unknown Pollutant | Degraded Aquatic Vegetation | 303d Listed | Low |
| Puckaway Lake | Puckaway Lake | | | 158700 | Lake | Green Lake, Marquette | Total Phosphorus | Excess Algal Growth, Eutrophication | TMDL Approved | Not Applicable |
| Buffalo Lake | Fox River At Buffalo Lake | | | 168000 | Reservoir | Marquette | Mercury | NA | Pollutant Removed | Delisted 2020 |
| Buffalo Lake | Fox River At Buffalo Lake | | | 168000 | Reservoir | Marquette | PCBs | PCBs Contaminated Fish Tissue | 303d Listed | Low |
| Grand River | Grand River | 0.00 | 21.00 | 159300 | River | Green Lake, Marquette | Total Phosphorus | Degraded Biological Community | TMDL Approved | Not Applicable |