| Badger Mill Creek | Badger Mill Creek | 0.00 | 2.00 | CLASS II | Dane | Map Link |
| Badger Mill Creek | Badger Mill Creek | 2.00 | 5.00 | CLASS II | Dane | Map Link |
| Black Earth Creek | Black Earth Creek | 6.95 | 11.08 | CLASS I | Dane | Map Link |
| Black Earth Creek | Black Earth Creek | 11.08 | 16.83 | CLASS I | Dane | Map Link |
| Black Earth Creek | Black Earth Creek | 16.83 | 19.35 | CLASS I | Dane | Map Link |
| Black Earth Creek | Black Earth Creek | 19.35 | 23.95 | CLASS I | Dane | Map Link |
| Black Earth Creek | Black Earth Creek | 23.95 | 27.08 | CLASS I | Dane | Map Link |
| Bohn Creek | Bohn Creek | 0.00 | 2.00 | CLASS I | Dane | Map Link |
| Bohn Creek | Bohn Creek | 2.00 | 3.45 | CLASS II | Dane | Map Link |
| Brewery Creek | Brewery Creek | 0.00 | 1.63 | CLASS II | Dane | Map Link |
| Deer Creek | Deer Creek | 0.00 | 4.68 | CLASS I | Dane | Map Link |
| Dunlap Creek | Dunlap Creek | 6.07 | 10.03 | CLASS II | Dane | Map Link |
| East Branch Blue Mounds Creek | Bohn Creek | 0.00 | 1.16 | CLASS II | Dane,Iowa | Map Link |
| East Branch Blue Mounds Creek | Bohn Creek | 1.16 | 5.12 | CLASS II | Dane | Map Link |
| Elvers Creek | Elvers Creek (Bohn Cr.) | 0.00 | 10.06 | CLASS I | Dane | Map Link |
| Flynn Creek | Flynn Creek | 0.00 | 4.60 | CLASS I | Dane | Map Link |
| Fryes Feeder | Fryes Feeder | 0.00 | 2.03 | CLASS I | Dane | Map Link |
| Garfoot Creek | Garfoot Creek | 0.00 | 4.34 | CLASS II | Dane | Map Link |
| German Valley Br | German Valley Branch | 0.00 | 7.63 | CLASS II | Dane | Map Link |
| Gordon Creek | Big Spring Creek | 14.22 | 22.43 | CLASS II | Dane,Iowa | Map Link |
| Henry Creek | Henry Creek | 0.00 | 0.98 | CLASS II | Dane | Map Link |
| Hustad Valley Creek | Hustad Valley Creek | 0.00 | 1.39 | CLASS I | Dane,Green | Map Link |
| Kittleson Valley Creek | Kittleson Valley Creek | 2.79 | 6.70 | CLASS II | Dane,Iowa | Map Link |
| Kittleson Valley Creek | Kittleson Valley Creek | 6.70 | 12.76 | CLASS II | Dane | Map Link |
| Moen Creek | Moen Creek | 0.00 | 2.35 | CLASS II | Dane | Map Link |
| Mt Vernon Creek | Mt. Vernon Creek | 0.00 | 3.47 | CLASS I | Dane | Map Link |
| Mt Vernon Creek | Mt. Vernon Creek | 3.47 | 5.90 | CLASS I | Dane | Map Link |
| Pleasant Valley Br | Pleasant Valley Branch | 0.00 | 5.92 | CLASS II | Dane | Map Link |
| Primrose Br | Primrose Branch | 0.00 | 6.29 | CLASS I | Dane | Map Link |
| Rutland Br | Anthony Branch | 0.00 | 2.59 | CLASS II | Dane | Map Link |
| Ryan Creek | Ryan Creek | 0.00 | 6.44 | CLASS I | Dane | Map Link |
| Schlapbach Creek | Schlapbach Creek | 0.00 | 2.81 | CLASS I | Dane | Map Link |
| Schlapbach Creek | Schlapbach Creek | 2.81 | 4.94 | CLASS I | Dane | Map Link |
| Spring Creek | Lodi Creek | 8.27 | 11.88 | CLASS II | Dane | Map Link |
| Story Creek | Story Creek (Tipperary) | 5.71 | 12.54 | CLASS I | Dane | Map Link |
| Sugar River | Sugar River | 82.33 | 91.86 | CLASS II | Dane | Map Link |
| Sugar River | Upper Sugar River | 56.14 | 82.33 | CLASS II | Dane,Green | Map Link |
| Syftestad Creek | Syftestad Creek | 0.00 | 5.16 | CLASS II | Dane | Map Link |
| Token Creek | Token Creek | 2.95 | 3.44 | NONE | Dane | Map Link |
| Token Creek | Token Creek | 3.44 | 7.25 | CLASS II | Dane | Map Link |
| Unnamed | Harbison Creek | 0.27 | 0.69 | CLASS II | Dane | Map Link |
| Unnamed | Unnamed | 0.00 | 1.00 | CLASS I | Dane | Map Link |
| Vermont Creek | Vermont Creek | 0.00 | 3.46 | CLASS II | Dane | Map Link |
| Vermont Creek | Vermont Creek | 3.43 | 9.56 | CLASS II | Dane | Map Link |
| West Branch Sugar River | West Branch Sugar River | 0.00 | 7.64 | CLASS I | Dane | Map Link |
| West Branch Sugar River | West Branch Sugar River | 7.65 | 18.82 | CLASS I | Dane | Map Link |
| West Branch Sugar River | West Branch Sugar River | 18.79 | 22.30 | CLASS I | Dane | Map Link |